Microarray Analysis

GraphLogic’s Microarray Analysis application is a web-based system that integrates powerful statistical analysis capabilities with complete project and data management functionalities. Securely and easily share your data with collaborators and remote project team members.

Comprehensive Data Processing

  • Data File Management (Batch Input Data File Submission & Storage)
  • Pass data to GO term and pathway analysis
  • Output Data Retrieval, Storage, and Project Management functionality
  • Email Notification to laboratory personnel, customers, and collaborators

Statistical Analysis

  • Complete integration of the Bioconductor suite (based on R language)
  • Preprocessing: RMA, gcRMA and MAS 5.0
  • Data transformation methods: log normalize, cross-chip scaling
  • Analysis methods include: ANOVA, Hypothesis testing, Limma & others
  • Clustering methods: Hierarchical, K-Means, Self-Organizing Maps, Principle Component Analysis

Features

  • Web-based (any browser)
  • Role-based access & security
  • Runs on any system architecture (Windows, Unix, Linux, MacOS)
  • Interfaces with Oracle, MySQL and SQL Server databases.
  • Import/export data from/to third party applications

Benefits

  • User friendly interface encourages experimenting with analytical methods
  • All microarray data in one application but easily accessed & shared
  • Project time-lines accelerated through simplified data sharing
  • Seamless data flow between analysis steps – no tedious file transfers

Customize

  • Customization available on a fixed project fee basis